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miRBase |
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Stem-loop sequence csi-MIR396b |
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Accession | MI0016707 (change log) | |||||
Description | Citrus sinensis miR396b stem-loop | |||||
Gene family | MIPF0000047; MIR396 | |||||
Literature search |
1 open access papers mention csi-MIR396b | |||||
Stem-loop |
----------ua u c c u ucuu augag ca 5' uga ccu uuuguauuuuuccacagcuuu uugaacugca ca ugc gcca g ||| ||| ||||||||||||||||||||| |||||||||| || ||| |||| 3' acu gga aaacauagaagggugucgaaa aacuuggcgu gu acg cggu a aacuuuaaaaua u c u u --uu --gua uc |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence csi-miR396b-5p |
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Accession | MIMAT0018464 |
Sequence |
20 - uuccacagcuuucuugaacug - 40 |
Evidence | experimental; Illumina [1-2] |
Mature sequence csi-miR396b-3p |
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Accession | MIMAT0037399 |
Sequence |
87 - guucaauaaagcugugggaag - 107 |
Evidence | experimental; Illumina [2] |
References |
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1 |
PMID:20398412
"Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
BMC Genomics. 11:246(2010).
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2 |
PMID:28054378
"MicroRNA annotation of plant genomes - Do it right or not at all"
Bioessays. [Epub prior to print](2017).
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