Stem-loop csi-MIR396b

Accession

MI0016707

Description

Citrus sinensis csi-MIR396b precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

1 open access papers mention csi-MIR396b
(1 sentences)

Sequence

uaugauccucuuuguauuuUUCCACAGCUUUCUUGAACUGcaucaucuuugcaugaggccacagacuuggcauggcauuuguugcgGUUCAAUAAAGCUGUGGGAAGauacaaacagguucaauaaaauuucaa
..(((.(((.(((((((((((((((((((((.((((((((((.((....(((.....((((......))))...)))..)).)))))))))).))))))))))))))))))))).))).)))............

Structure

----------ua   u   c                     C          u  ucuu   augag    ca 
            uga ccu uuuguauuuUUCCACAGCUUU UUGAACUGca ca    ugc     gcca  g
            ||| ||| ||||||||||||||||||||| |||||||||| ||    |||     ||||   
            acu gga aaacauaGAAGGGUGUCGAAA AACUUGgcgu gu    acg     cggu  a
aacuuuaaaaua   u   c                     U          u  --uu   --gua    uc 

Annotation confidence Not enough data

Genome context

chr4: 3335321-3335454 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR396b

Mature csi-miR396b-5p

• Accession: MIMAT0018464
• Description: Citrus sinensis csi-miR396b-5p mature miRNA
• Sequence: 20 - UUCCACAGCUUUCUUGAACUG - 40
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR396b-3p

• Accession: MIMAT0037399
• Description: Citrus sinensis csi-miR396b-3p mature miRNA
• Sequence: 87 - GUUCAAUAAAGCUGUGGGAAG - 107
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113