Stem-loop sequence csi-MIR396a

Accession

MI0016706 (change log)

Description

Citrus sinensis miR396a stem-loop

Gene family

MIPF0000047; MIR396

Literature search

1 open access papers mention csi-MIR396a
(1 sentences)

Stem-loop

   ------------------------c  --a         u   a c                  c   c   aauuuuccgaucgaua 
5'                          ga   gguccucuu gug u uuccacagcuuucuugaa ugu uug                c
                            ||   ||||||||| ||| | |||||||||||||||||| ||| |||                c
3'                          cu   uuaggagaa cau a aaggugucgaaagaacuu aca aac                g
   cuagagauaguuuucucucuaacua  ggu         u   c a                  a   c   ccuuaauuaguacgug 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr7: 3041218-3041370 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0016706

Mature sequence csi-miR396a-5p

• Accession: MIMAT0018463
• Sequence: 21 - uuccacagcuuucuugaacug - 41
• Evidence: experimental; Illumina [1-2]

Mature sequence csi-miR396a-3p

• Accession: MIMAT0037398
• Sequence: 89 - auucaagaaagcuguggaaaa - 109
• Evidence: experimental; Illumina [2]

References

1. PMID:20398412 "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type" Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X BMC Genomics. 11:246(2010).
2. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).