Stem-loop csi-MIR394a

Accession

MI0016704

Description

Citrus sinensis csi-MIR394a precursor miRNA

Gene family

MIPF0000100; MIR394

Literature search

4 open access papers mention csi-MIR394a
(14 sentences)

Sequence

cuucuuacagaguuuaUUGGCAUUCUGUCCACCUCCguuccccaucgauugaaucugaaagccuuuuucuuuucuuguuuuugugcuucucucuuucaugcucauggaggugggcauacugccaacugagcucuguuggcuucucuu
...((.((((((((((((((((...(((((((((((((....(((.((..((....(((((((...................).)))).))))..)))))...)))))))))))))...)))))).)))))))))).))........

Structure

-----cuu  u          -      UUC             uccc   c  uu  aucu  -    - uuuuucuu 
        cu acagaguuua UUGGCA   UGUCCACCUCCgu    cau ga  ga    ga aagc c        u
        || |||||||||| ||||||   |||||||||||||    ||| ||  ||    || |||| |        u
        gg ugucucgagu aaccgu   acggguggaggua    gua cu  cu    cu uucg g        c
uucucuuc  u          c      cau             -cuc   -  uu  ----  c    u uuuuuguu 

Annotation confidence Not enough data

Genome context

chr3: 27992160-27992306 [+]

Mature csi-miR394a

• Accession: MIMAT0018461
• Description: Citrus sinensis csi-miR394a mature miRNA
• Sequence: 17 - UUGGCAUUCUGUCCACCUCC - 36
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113