Stem-loop hsa-mir-550b-1

Accession

MI0016686

Symbol

HGNC: MIR550B1

Description

Homo sapiens hsa-mir-550b-1 precursor miRNA

Gene family

MIPF0000334; mir-550

Literature search

12 open access papers mention hsa-mir-550b-1
(24 sentences)

Sequence

7336 reads, 24 reads per million, 123 experiments

agagacuuguuggagAUGUGCCUGAGGGAGUAAGACAcuaucuuacaacaacagggcUCUUACUCCCUCAGGCACUGcaccagccagcaaagcauca
.(((..(((((((....((((((((((((((((((..((..............))..))))))))))))))))))........)))))))..).)).

Structure

a  - ac       ----agAU                  CA  aucuua 
 ga g  uuguugg        GUGCCUGAGGGAGUAAGA  cu      c
 || |  |||||||        ||||||||||||||||||  ||       
 cu c  aacgacc        CACGGACUCCCUCAUUCU  gg      a
a  a ga       gaccacGU                  cg  acaaca 

Annotation confidence Not enough data

Genome context

chr7: 30289794-30289890 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from hsa-mir-550b-1

Disease association

hsa-mir-550b-1 is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsa-miR-550b-3p

• Accession: MIMAT0018445
• Description: Homo sapiens hsa-miR-550b-3p mature miRNA
• Sequence: 58 - UCUUACUCCCUCAGGCACUG - 77
• Evidence: experimental ; Illumina [1]

Mature hsa-miR-550b-2-5p

• Accession: MIMAT0022737
• Description: Homo sapiens hsa-miR-550b-2-5p mature miRNA
• Sequence: 16 - AUGUGCCUGAGGGAGUAAGACA - 37
• Evidence: not_experimental

References

1. PubMed ID: 20459774
   Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls
   Witten D, Tibshirani R, Gu SG, Fire A, Lui WO
   BMC Biol (2010) 8:58