Stem-loop sequence hsa-mir-3689b

Accession

MI0016411 (change log)

Symbol

HGNC:MIR3689B

Description

Homo sapiens miR-3689b stem-loop

Gene family

MIPF0001144; mir-3689

Literature search

2 open access papers mention hsa-mir-3689b
(2 sentences)

Stem-loop

       cu ug uc  ug      --cu    cu ug     ug    g  ug        g    ug     ug  a 
5' gauc  g  c  cc  gggggu    gauc  g  cuucc  ggag ug  auaucaug uucc  ggagg  ug u
   ||||  |  |  ||  ||||||    ||||  |  |||||  |||| ||  |||||||| ||||  |||||  ||  
3' cuag  u  g  gg  cccucg    cuag  u  ggagg  ccuu gu  uauagugu gagg  ccuuc  gc c
       -- gu ga  gu      ugcc    -- gu     gu    g  gu        g    gu     gu  c 

Deep sequencing

148 reads, 0 reads per million, 28 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr9: 134850125-134850272 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000054771 ; MED27-002; intron 3

  OTTHUMT00000054770 ; MED27-001; intron 3

  ENST00000357028 ; MED27-002; intron 3

  ENST00000292035 ; MED27-001; intron 3

Clustered miRNAs

< 10kb from hsa-mir-3689b

• hsa-mir-3689f: chr9: 134850742-134850807 [-]
• hsa-mir-3689e: chr9: 134850570-134850641 [-]
• hsa-mir-3689d-2: chr9: 134850277-134850356 [-]
• hsa-mir-3689b: chr9: 134850125-134850272 [-]
• hsa-mir-3689d-1: chr9: 134849609-134849682 [-]
• hsa-mir-3689a: chr9: 134849487-134849564 [-]
• hsa-mir-3689c: chr9: 134849298-134849369 [-]

Database links

• EntrezGene:MIR3689B
• HGNC:MIR3689B
• RNAcentral:URS000075A760_9606
• miRBase Tracker:MI0016411

Mature sequence hsa-miR-3689b-5p

• Accession: MIMAT0018180
• Previous IDs: hsa-miR-3689b
• Sequence: 46 - ugugauaucaugguuccuggga - 67
• Deep sequencing: 124 reads, 13 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075D33D_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3689b-5p
  • TargetScanVert:hsa-miR-3689b-5p
  • miRDB:hsa-miR-3689b-5p

Mature sequence hsa-miR-3689b-3p

• Accession: MIMAT0018181
• Previous IDs: hsa-miR-3689b*
• Sequence: 86 - cugggaggugugauauuguggu - 107
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-3689b-3p
  • TargetScanVert:hsa-miR-3689b-3p
  • miRDB:hsa-miR-3689b-3p

References

1. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).