Stem-loop sequence hsa-mir-3180-4

AccessionMI0016408 (change log)
Symbol HGNC:MIR3180-4
DescriptionHomo sapiens miR-3180-4 stem-loop
Gene family MIPF0000894; mir-3180
Literature search

6 open access papers mention hsa-mir-3180-4
(58 sentences)

Stem-loop 
             --a       u    -c     aac   ---u     g a  u         -- -  g       g   ac 
5' gcuccgcccc   cgucgca gcgc  ccggg   gcg    ggggc g gc uccggaggc  c cc cucugcu ccg  c
   ||||||||||   ||||||| ||||  |||||   |||    ||||| | || |||||||||  | || ||||||| |||   
3' cgaggcgggg   gcggugu cgcg  ggucc   cgc    cccug c cg aggccuccg  g gg gaggcga ggu  c
             gaa       -    cu     ggu   uacu     a -  u         aa u  -       -   gu
Get sequence
Deep sequencing
4718 reads, 15 reads per million, 80 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chr16: 15154850-15155002 [-]
sense
OTTHUMT00000252087 ; RRN3-001; 3'UTR (exon 18)
OTTHUMT00000422444 ; RRN3-002; intron 18
ENST00000198767 ; RRN3-001; 3'UTR (exon 18)
ENST00000563559 ; RRN3-002; intron 18
antisense
OTTHUMT00000422421 ; PDXDC1-016; intron 16
ENST00000535621 ; PDXDC1-016; intron 16
Database links

Mature sequence hsa-miR-3180

Accession MIMAT0018178
Sequence

36 -  

uggggcggagcuuccggag

 - 54

Get sequence
Deep sequencing9356 reads, 63 experiments
Evidence experimental; Illumina [1]
Database links
Predicted targets

References

1
PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).