Stem-loop sequence hsa-mir-3680-1

Accession

MI0016081 (change log)

Previous IDs

hsa-mir-3680

Symbol

HGNC:MIR3680-1

Description

Homo sapiens miR-3680-1 stem-loop

Gene family

MIPF0001338; mir-3680

Literature search

4 open access papers mention hsa-mir-3680-1
(29 sentences)

Stem-loop

                g  uc    a    a ug      u  aa 
5' aaauuuaaggagg ac  acuc cagg u  ugcaaa gc  a
   ||||||||||||| ||  |||| |||| |  |||||| ||  g
3' uuuaaauuccucc ug  ugag gucc a  acguuu cg  u
                g  ga    g    c gu      u  gu 

Deep sequencing

149 reads, 3.92 reads per million, 51 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr16: 21506049-21506135 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000378303 ; CTD-2547E10.2-001; intron 1

  OTTHUMT00000378304 ; CTD-2547E10.2-002; intron 1

  OTTHUMT00000400442 ; CTD-2547E10.2-006; intron 1

  ENST00000522480 ; CTD-2547E10.2-001; intron 1

  ENST00000522841 ; CTD-2547E10.2-002; intron 1

  ENST00000437413 ; CTD-2547E10.2-006; intron 1

Database links

• EntrezGene:MIR3680
• HGNC:MIR3680-1
• miRBase Tracker:MI0016081

Mature sequence hsa-miR-3680-5p

• Accession: MIMAT0018106
• Previous IDs: hsa-miR-3680
• Sequence: 14 - gacucacucacaggauugugca - 35
• Deep sequencing: 178 reads, 37 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-3680-5p
  • TargetScanVert:hsa-miR-3680-5p
  • miRDB:hsa-miR-3680-5p

Mature sequence hsa-miR-3680-3p

• Accession: MIMAT0018107
• Previous IDs: hsa-miR-3680*
• Sequence: 50 - uuuugcaugacccugggaguagg - 72
• Deep sequencing: 114 reads, 20 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-3680-3p
  • TargetScanVert:hsa-miR-3680-3p
  • miRDB:hsa-miR-3680-3p

References

1. PMID:20459673 "Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood" Vaz C, Ahmad HM, Sharma P, Gupta R, Kumar L, Kulshreshtha R, Bhattacharya A BMC Genomics. 11:288(2010).