Stem-loop sequence hsa-mir-3622b

Accession

MI0016014 (change log)

Symbol

HGNC:MIR3622B

Description

Homo sapiens miR-3622b stem-loop

Gene family

MIPF0001179; mir-3622

Literature search

8 open access papers mention hsa-mir-3622b
(70 sentences)

Stem-loop

   agugaua                          g         cu   c 
5'        uaauagagggugcacaggcaugggag ucaggugag  cag u
          |||||||||||||||||||||||||| |||||||||  |||  
3'        guuaucucccacguguccgugcccuc aguccacuc  guc c
   ----ucg                          g         -c   c 

Deep sequencing

89 reads, 6.52 reads per million, 46 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr8: 27701673-27701767 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-3622b

• hsa-mir-3622a: chr8: 27701677-27701759 [+]
• hsa-mir-3622b: chr8: 27701673-27701767 [-]

Database links

• EntrezGene:MIR3622B
• HGNC:MIR3622B
• miRBase Tracker:MI0016014

Mature sequence hsa-miR-3622b-5p

• Accession: MIMAT0018005
• Sequence: 23 - aggcaugggaggucagguga - 42
• Deep sequencing: 18 reads, 14 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-3622b-5p
  • TargetScanVert:hsa-miR-3622b-5p
  • miRDB:hsa-miR-3622b-5p

Mature sequence hsa-miR-3622b-3p

• Accession: MIMAT0018006
• Sequence: 58 - ucaccugagcucccgugccug - 78
• Deep sequencing: 57 reads, 31 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-3622b-3p
  • TargetScanVert:hsa-miR-3622b-3p
  • miRDB:hsa-miR-3622b-3p

References

1. PMID:20459774 "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls" Witten D, Tibshirani R, Gu SG, Fire A, Lui WO BMC Biol. 8:58(2010).