Stem-loop sequence hsa-mir-4279

Accession

MI0015887 (change log)

Symbol

HGNC:MIR4279

Description

Homo sapiens miR-4279 stem-loop

Literature search

3 open access papers mention hsa-mir-4279
(7 sentences)

Stem-loop

   ug   ----u        --      c   uu 
5'   cuc     guggagcu  gaggag aga  c
     |||     ||||||||  |||||| |||  u
3'   gag     cacuucgg  cuccuc ucu  c
   --   uccuc        cc      -   cu 

Deep sequencing

294 reads, 13.3 reads per million, 75 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr5: 31936102-31936159 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000366611 ; PDZD2-004; intron 1

  OTTHUMT00000366608 ; PDZD2-001; intron 2

  ENST00000502489 ; PDZD2-004; intron 1

  ENST00000282493 ; PDZD2-201; intron 1

  ENST00000438447 ; PDZD2-001; intron 2

Database links

• EntrezGene:MIR4279
• HGNC:MIR4279
• miRBase Tracker:MI0015887

Mature sequence hsa-miR-4279

• Accession: MIMAT0016909
• Sequence: 33 - cucuccucccggcuuc - 48
• Deep sequencing: 41 reads, 28 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetMiner:hsa-miR-4279
  • TargetScanVert:hsa-miR-4279
  • miRDB:hsa-miR-4279
  • microrna.org:hsa-miR-4279

References

1. PMID:19784364 "Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors" Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP PLoS One. 4:e7192(2009).