Stem-loop sequence hsa-mir-3196

Accession

MI0014241 (change log)

Symbol

HGNC:MIR3196

Description

Homo sapiens miR-3196 stem-loop

Literature search

2 open access papers mention hsa-mir-3196
(11 sentences)

Stem-loop

     g      c       -ca       cccc 
5' gg uggggg ggggcgg   ggggccu    c
   || |||||| |||||||   |||||||    a
3' uc acccuc cuucguc   ccccgga    g
     g      u       uua       ccgu 

Deep sequencing

2715 reads, 12.5 reads per million, 136 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr20: 63238779-63238842 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR3196
• HGNC:MIR3196
• RNAcentral:URS000075DDDD_9606
• miRBase Tracker:MI0014241

Mature sequence hsa-miR-3196

• Accession: MIMAT0015080
• Sequence: 10 - cggggcggcaggggccuc - 27
• Deep sequencing: 2648 reads, 135 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000033B548_9606
• Predicted targets:
  • TargetMiner:hsa-miR-3196
  • TargetScanVert:hsa-miR-3196
  • miRDB:hsa-miR-3196
  • microrna.org:hsa-miR-3196

References

1. PMID:20300190 "Characterization of the Melanoma miRNAome by Deep Sequencing" Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK PLoS One. 5:e9685(2010).