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miRBase |
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Stem-loop sequence hsa-mir-3154 |
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Accession | MI0014182 (change log) | |||||
Symbol | HGNC:MIR3154 | |||||
Description | Homo sapiens miR-3154 stem-loop | |||||
Gene family | MIPF0001387; mir-3154 | |||||
Literature search |
1 open access papers mention hsa-mir-3154 | |||||
Stem-loop |
- cu ca - g caccc -a gu 5' gg ccccuc ucu gc cccagcuccc cu cugcc c c || |||||| ||| || |||||||||| || ||||| | 3' cc ggggag aga cg ggguugaggg ga gacgg g a a -- -- a - ----a ag aa |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
Berezikov et al. proposed this sequence as a miRNA candidate based on the RAKE method [1]. Goff et al. [2] and Stark et al. [3] later validated its expression in human using high-throughput sequencing. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence hsa-miR-3154 |
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Accession | MIMAT0015028 |
Sequence |
54 - cagaaggggaguugggagcaga - 75 |
Deep sequencing | 237 reads, 54 experiments |
Evidence | experimental; SOLiD [2], Illumina [3-5] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:16954537
"Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis"
Genome Res. 16:1289-1298(2006).
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2 |
PMID:19784364
"Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors"
PLoS One. 4:e7192(2009).
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3 |
PMID:20300190
"Characterization of the Melanoma miRNAome by Deep Sequencing"
PLoS One. 5:e9685(2010).
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4 |
PMID:21606961
"Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia"
Leukemia. 25:1389-1399(2011).
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5 |
PMID:22454130
"Transcription factors are targeted by differentially expressed miRNAs in primates"
Genome Biol Evol. 4:552-564(2012).
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