Stem-loop sequence tgu-mir-455

AccessionMI0013840 (change log)
DescriptionTaeniopygia guttata miR-455 stem-loop
Gene family MIPF0000129; mir-455
Literature search

1 open access papers mention tgu-mir-455
(1 sentences)

Stem-loop 
   ---------gg          u      a   c   gaa 
5'            guaugugccc uggacu cau gug   g
              |||||||||| |||||| ||| |||    
3'            cauauacggg accuga gua cac   c
   aacuccguuca          u      c   c   gac
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr17: 5173177-5173247 [+]
sense
ENSTGUT00000018731 ; tgu-mir-455-201; exon 1
ENSTGUT00000003631 ; COL27A1-201; intron 8
antisense
Database links

Mature sequence tgu-miR-455-5p

Accession MIMAT0014655
Previous IDstgu-miR-455*
Sequence

4 -  

uaugugcccuuggacuacaucg

 - 25

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

Mature sequence tgu-miR-455-3p

Accession MIMAT0014610
Previous IDstgu-miR-455
Sequence

41 -  

ugcaguccaugggcauauaca

 - 61

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).