Stem-loop sequence tgu-mir-29b-1

AccessionMI0013830 (change log)
DescriptionTaeniopygia guttata miR-29b-1 stem-loop
Gene family MIPF0000009; mir-29
Stem-loop 
   ------------         u      gu      uuaac 
5'             cugguuuca auggug  uuagau     u
               ||||||||| ||||||  ||||||     a
3'             gacuaaagu uaccac  gaucug     u
   ggagguucuugu         u      --      uuacu
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr1A: 2715204-2715274 [+]
sense
ENSTGUT00000018556 ; tgu-mir-29b-1-201; exon 1
antisense
Clustered miRNAs
< 10kb from tgu-mir-29b-1
tgu-mir-29b-1chr1A: 2715204-2715274 [+]
tgu-mir-29a-1chr1A: 2716218-2716288 [+]
Database links

Mature sequence tgu-miR-29b-1-5p

Accession MIMAT0031064
Sequence

1 -  

cugguuucauauggugguuuaga

 - 23

Get sequence
Evidence experimental; Illumina [2]

Mature sequence tgu-miR-29b-3p

Accession MIMAT0014601
Previous IDstgu-miR-29b
Sequence

41 -  

uagcaccauuugaaaucagug

 - 61

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).