Stem-loop sequence tgu-mir-18a

Accession

MI0013815 (change log)

Description

Taeniopygia guttata miR-18a stem-loop

Gene family

MIPF0000001; mir-17

Stem-loop

   cuuuuuguacu    u   uc   u    a   -  aa u 
5'            aagg gca  uag gcag uag ug  g a
              |||| |||  ||| |||| ||| ||  | g
3'            uucc cgu  auc cguc auc ac  u a
   ---------uc    u   ga   c    -   u  ga u 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (taeGlu3.2.4): chr1: 43202937-43203008 [-]
• Overlapping transcripts:

  sense

  ENSTGUT00000018408 ; tgu-mir-18a-201; exon 1

Clustered miRNAs

< 10kb from tgu-mir-18a

• tgu-mir-17a: chr1: 43203076-43203147 [-]
• tgu-mir-18a: chr1: 43202937-43203008 [-]
• tgu-mir-19a: chr1: 43202791-43202860 [-]
• tgu-mir-20a: chr1: 43202624-43202696 [-]
• tgu-mir-19b-1: chr1: 43202482-43202554 [-]
• tgu-mir-92-1: chr1: 43202366-43202437 [-]

Database links

• miRBase Tracker:MI0013815

Mature sequence tgu-miR-18a

• Accession: MIMAT0014587
• Sequence: 11 - uaaggugcaucuagugcagaua - 32
• Evidence: experimental; 454 [1], Illumina [2]

References

1. PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2. PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).