Stem-loop sequence tgu-mir-92-1

Accession

MI0013800 (change log)

Description

Taeniopygia guttata miR-92-1 stem-loop

Gene family

MIPF0000013; mir-25

Literature search

3 open access papers mention tgu-mir-92-1
(9 sentences)

Stem-loop

   ---------c            c   u       ug gug 
5'           acagguugggau agu gcaaugc  u   u
             |||||||||||| ||| |||||||  |    
3'           uguccggcccug uca cguuaug  g   g
   ugguuggagu            u   -       gu ucu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (taeGlu3.2.4): chr1: 43202366-43202437 [-]
• Overlapping transcripts:

  sense

  ENSTGUT00000018665 ; tgu-mir-92-1-201; exon 1

Clustered miRNAs

< 10kb from tgu-mir-92-1

• tgu-mir-17a: chr1: 43203076-43203147 [-]
• tgu-mir-18a: chr1: 43202937-43203008 [-]
• tgu-mir-19a: chr1: 43202791-43202860 [-]
• tgu-mir-20a: chr1: 43202624-43202696 [-]
• tgu-mir-19b-1: chr1: 43202482-43202554 [-]
• tgu-mir-92-1: chr1: 43202366-43202437 [-]

Database links

• miRBase Tracker:MI0013800

Mature sequence tgu-miR-92-1-5p

• Accession: MIMAT0027007
• Sequence: 4 - agguugggaucaguugcaaugcu - 26
• Evidence: experimental; Illumina [2]

Mature sequence tgu-miR-92-3p

• Accession: MIMAT0014574
• Sequence: 41 - uauugcacuugucccggccugu - 62
• Evidence: experimental; 454 [1], Illumina [1-2]

References

1. PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2. PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).