Stem-loop sequence tgu-mir-17a

AccessionMI0013784 (change log)
DescriptionTaeniopygia guttata miR-17a stem-loop
Gene family MIPF0000001; mir-17
Stem-loop 
   ---------  -ca        a  g     gua  gaua 
5'          gu   aagugcuu ca ugcag   gu    u
            ||   |||||||| || |||||   ||     
3'          cg   uucacgga gu acguc   ca    a
   guuguauua  aug        a  g     auc  agau
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr1: 43203076-43203147 [-]
sense
ENSTGUT00000018533 ; tgu-mir-17a-201; exon 1
Clustered miRNAs
< 10kb from tgu-mir-17a
tgu-mir-17achr1: 43203076-43203147 [-]
tgu-mir-18achr1: 43202937-43203008 [-]
tgu-mir-19achr1: 43202791-43202860 [-]
tgu-mir-20achr1: 43202624-43202696 [-]
tgu-mir-19b-1chr1: 43202482-43202554 [-]
tgu-mir-92-1chr1: 43202366-43202437 [-]
Database links

Mature sequence tgu-miR-17a-5p

Accession MIMAT0017390
Sequence

3 -  

caaagugcuuacagugcagguag

 - 25

Get sequence
Evidence experimental; Illumina [2]

Mature sequence tgu-miR-17a-3p

Accession MIMAT0014564
Previous IDstgu-miR-17a
Sequence

41 -  

acugcagugaaggcacuuguag

 - 62

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).