Stem-loop tgu-mir-135b

Accession

MI0013778

Description

Taeniopygia guttata tgu-mir-135b precursor miRNA

Gene family

MIPF0000028; mir-135

Sequence

ugccgucuugUAUGGCUUUUUAUUCCUAUGUGAuuauacaucccacuucauauagggauugaagccgugcagu
.......((((((((((((..((((((((((((..............)))))))))))).)))))))))))).

Structure

ugccguc            UU            uuauac 
       uugUAUGGCUUU  AUUCCUAUGUGA      a
       ||||||||||||  ||||||||||||       
       gacgugccgaag  uagggauauacu      u
------u            -u            ucaccc 

Annotation confidence Not enough data

Genome context

chr12: 6536042-6536114 [-]

Mature tgu-miR-135b

• Accession: MIMAT0014560
• Description: Taeniopygia guttata tgu-miR-135b mature miRNA
• Sequence: 11 - UAUGGCUUUUUAUUCCUAUGUGA - 33
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727