Stem-loop sequence tgu-mir-140

AccessionMI0013774 (change log)
DescriptionTaeniopygia guttata miR-140 stem-loop
Gene family MIPF0000085; mir-140
Literature search

1 open access papers mention tgu-mir-140
(1 sentences)

Stem-loop 
   cgu    ugcca             a       uu   uc 
5'    gucc     gugguuuuacccu ugguagg  acg  a
      ||||     ||||||||||||| |||||||  |||   
3'    cagg     caccaagauggga accaucu  ugu  u
   ---    -----             c       --   cg
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr11: 11805159-11805230 [+]
sense
ENSTGUT00000018638 ; tgu-mir-140-201; exon 1
ENSTGUT00000008503 ; WWP2-201; intron 15
Database links

Mature sequence tgu-miR-140-5p

Accession MIMAT0014557
Previous IDstgu-miR-140
Sequence

11 -  

cagugguuuuacccuaugguag

 - 32

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

Mature sequence tgu-miR-140-3p

Accession MIMAT0014642
Previous IDstgu-miR-140*
Sequence

50 -  

uaccacaggguagaaccacggac

 - 72

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).