Stem-loop sequence tgu-let-7f

Accession

MI0013743 (change log)

Description

Taeniopygia guttata let-7f stem-loop

Gene family

MIPF0000002; let-7

Literature search

2 open access papers mention tgu-let-7f
(3 sentences)

Stem-loop

   ucug    a ug                      ---------       u 
5'     ucag g  agguaguagauuguauaguugu         aggguag u
       |||| |  ||||||||||||||||||||||         ||||||| a
3'     aguc c  uccguuaucuaacauaucaaua         ucccauu u
   ---g    - cu                      gaggacuug       u 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (taeGlu3.2.4): chr12: 772417-772508 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from tgu-let-7f

• tgu-let-7a-3: chr12: 772013-772103 [+]
• tgu-let-7f: chr12: 772417-772508 [+]
• tgu-let-7d: chr12: 773412-773503 [+]
• tgu-mir-2987: chr12: 776733-776812 [+]

Database links

• miRBase Tracker:MI0013743

Mature sequence tgu-let-7f-5p

• Accession: MIMAT0014530
• Sequence: 11 - ugagguaguagauuguauaguu - 32
• Evidence: experimental; 454 [1], Illumina [1-2]

Mature sequence tgu-let-7f-3p

• Accession: MIMAT0026988
• Sequence: 67 - cuauacaaucuauugccuucc - 87
• Evidence: experimental; Illumina [2]

References

1. PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2. PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).