Stem-loop sequence tgu-mir-122

AccessionMI0013742 (change log)
DescriptionTaeniopygia guttata miR-122 stem-loop
Gene family MIPF0000095; mir-122
Literature search

1 open access papers mention tgu-mir-122
(3 sentences)

Stem-loop 
   ccca       gg       c           uguc 
5'     gagcugu  aguguga aaugguguuug    c
       |||||||  ||||||| |||||||||||    a
3'     cuugaua  ucacacu uuaccgcaaac    u
   ---c       aa       a           uauc
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chrZ_random: 328161-328232 [+]
sense
ENSTGUT00000018335 ; tgu-mir-122-201; exon 1
Database links

Mature sequence tgu-miR-122-5p

Accession MIMAT0014529
Sequence

11 -  

uggagugugacaaugguguuug

 - 32

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

Mature sequence tgu-miR-122-3p

Accession MIMAT0026987
Sequence

46 -  

aacgccauuaucacacuaaau

 - 66

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).