Stem-loop sequence tgu-mir-2989-1

AccessionMI0013736 (change log)
DescriptionTaeniopygia guttata miR-2989-1 stem-loop
Gene family MIPF0001039; mir-2989
Literature search

1 open access papers mention tgu-mir-2989-1
(2 sentences)

Stem-loop 
   -----ca          a  u    agaacuc        -ggga     g 
5'        uaugcucagc cg gaug       uguuggua     caucu a
          |||||||||| || ||||       ||||||||     |||||  
3'        gugcgggucg gu cuau       gcaaccgu     guggg g
   ucauaag          a  -    -------        aagua     a
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr8: 3326534-3326623 [-]
intergenic
Clustered miRNAs
< 10kb from tgu-mir-2989-1
tgu-mir-2989-2chr8: 3329105-3329194 [-]
tgu-mir-2989-1chr8: 3326534-3326623 [-]
Database links

Mature sequence tgu-miR-2989

Accession MIMAT0014525
Sequence

11 -  

gcacgugaugagaacucugu

 - 30

Get sequence
Evidence experimental; 454 [1], Illumina [2]

References

1
PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
2
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).