Stem-loop sequence tgu-let-7a-4

AccessionMI0013725 (change log)
DescriptionTaeniopygia guttata let-7a-4 stem-loop
Gene family MIPF0000002; let-7
Literature search

2 open access papers mention tgu-let-7a-4
(3 sentences)

   ucugug    u          gu         ---ugg  gg -       
5'       gagg gagguaguag  uguauaguu      ug  a gggauu 
         |||| ||||||||||  |||||||||      ||  | ||||| u
3'       uucc uuccguuauc  acauaucaa      ac  u cccuag 
   ----aa    -          ug         uagugg  uu a       
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (taeGlu3.2.4) Overlapping transcripts
chr26: 532798-532889 [-]
Clustered miRNAs
< 10kb from tgu-let-7a-4
tgu-let-7echr26: 532984-533075 [-]
tgu-let-7a-4chr26: 532798-532889 [-]
Database links

Mature sequence tgu-let-7a-5p

Accession MIMAT0014519
Previous IDstgu-let-7a

11 - 


 - 32

Get sequence
Evidence experimental; 454 [1], Illumina [1-2]

Mature sequence tgu-let-7a-4-3p

Accession MIMAT0031086

68 - 


 - 89

Get sequence
Evidence experimental; Illumina [2]


PMID:20360741 "The genome of a songbird" Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li Nature. 464:757-762(2010).
PMID:23268654 "Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression" Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X BMC Genomics. 13:727(2012).