Stem-loop tgu-mir-7-1

Accession

MI0013704

Description

Taeniopygia guttata tgu-mir-7-1 precursor miRNA

Gene family

MIPF0000022; mir-7

Literature search

1 open access papers mention tgu-mir-7-1
(5 sentences)

Sequence

uaguucugugUGGAAGACUAGUGAUUUUGUUGUuuuuugauaacuaaauugaCAACAAAUCACAGUCUGCCAU
.........((((.(((((.(((((((.((((((..((........))..)))))))))))))))))).))))

Structure

uaguucugu    A     A       U      uu  gau 
         gUGG AGACU GUGAUUU GUUGUu  uu   a
         |||| ||||| ||||||| ||||||  ||    
         UACC UCUGA CACUAAA CAACag  aa   a
---------    G     -       -      uu  auc 

Annotation confidence Not enough data

Genome context

chrZ: 52731915-52731987 [+]

Mature tgu-miR-7-1-3p

• Accession: MIMAT0014632
• Description: Taeniopygia guttata tgu-miR-7-1-3p mature miRNA
• Sequence: 53 - CAACAAAUCACAGUCUGCCAU - 73
• Evidence: experimental ; 454 [1], Illumina [1]

Mature tgu-miR-7-5p

• Accession: MIMAT0014510
• Description: Taeniopygia guttata tgu-miR-7-5p mature miRNA
• Sequence: 11 - UGGAAGACUAGUGAUUUUGUUGU - 33
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727