Stem-loop sequence cel-mir-2953

Accession

MI0013633 (change log)

Description

Caenorhabditis elegans miR-2953 stem-loop

Stem-loop

   --        u   c    aa     uaug 
5'   uacagaag guu guga  auaaa    u
     |||||||| ||| ||||  |||||    g
3'   augucuuc cga cacu  uauuu    u
   cg        u   u    ag     uuuu 

Deep sequencing

29 reads, 0 reads per million, 8 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrII: 6747182-6747242 [+]
• Overlapping transcripts:

  sense

  F41G3.5 ; F41G3.5; intron 2

Database links

• miRBase Tracker:MI0013633

Mature sequence cel-miR-2953-5p

• Accession: MIMAT0014446
• Sequence: 1 - uacagaaguguucgugaaaau - 21
• Deep sequencing: 11 reads, 6 experiments
• Evidence: experimental; CLIPseq [1], Illumina [2]
• Predicted targets:
  • TargetScanWorm:cel-miR-2953-5p
  • microrna.org:cel-miR-2953-5p

Mature sequence cel-miR-2953-3p

• Accession: MIMAT0014447
• Sequence: 41 - gaucacuagcucuucuguagc - 61
• Deep sequencing: 16 reads, 5 experiments
• Evidence: experimental; CLIPseq [1], Illumina [2]
• Predicted targets:
  • TargetScanWorm:cel-miR-2953-3p
  • microrna.org:cel-miR-2953-3p

References

1. PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).
2. PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).