Stem-loop sequence eca-mir-660

Accession

MI0012983 (change log)

Description

Equus caballus miR-660 stem-loop

Gene family

MIPF0000113; mir-188

Literature search

1 open access papers mention eca-mir-660
(2 sentences)

Stem-loop

   ----------cu    c          -c    u      c    u   gaau 
5'             gcuc uucuccugua  ccau gcauau ggag ugu    u
               |||| ||||||||||  |||| |||||| |||| |||    c
3'             cgag gggaggacau  ggua cgugug ccuc acg    u
   guacuacuguuc    c          ua    -      u    c   aaag 

Deep sequencing

2455 reads, 150 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chrX: 40076530-40076626 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000011707 ; CLCN5-201; intron 1

Clustered miRNAs

< 10kb from eca-mir-660

• eca-mir-532: chrX: 40068460-40068549 [+]
• eca-mir-188: chrX: 40068847-40068914 [+]
• eca-mir-500-1: chrX: 40073284-40073367 [+]
• eca-mir-362: chrX: 40073827-40073892 [+]
• eca-mir-501: chrX: 40074566-40074649 [+]
• eca-mir-500-2: chrX: 40075101-40075184 [+]
• eca-mir-660: chrX: 40076530-40076626 [+]
• eca-mir-502: chrX: 40077407-40077486 [+]

Database links

• EntrezGene:MIR660
• miRBase Tracker:MI0012983

Mature sequence eca-miR-660

• Accession: MIMAT0013241
• Sequence: 16 - uacccauugcauaucggaguug - 37
• Deep sequencing: 2450 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).