Stem-loop sequence eca-mir-532

Accession

MI0012979 (change log)

Description

Equus caballus miR-532 stem-loop

Gene family

MIPF0000113; mir-188

Literature search

2 open access papers mention eca-mir-532
(3 sentences)

Stem-loop

   gauuu    u       a  u      a    a   cc  uggca 
5'      gcuu cucucuu ca gccuug gugu gga  gu     u
        |||| ||||||| || |||||| |||| |||  ||     c
3'      cgaa gggagga gu cggaac caca ccu  ca     u
   ---uc    c       c  u      c    c   cc  uuaau 

Deep sequencing

5022 reads, 350 reads per million, 2 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chrX: 40068460-40068549 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000011707 ; CLCN5-201; intron 1

Clustered miRNAs

< 10kb from eca-mir-532

• eca-mir-532: chrX: 40068460-40068549 [+]
• eca-mir-188: chrX: 40068847-40068914 [+]
• eca-mir-500-1: chrX: 40073284-40073367 [+]
• eca-mir-362: chrX: 40073827-40073892 [+]
• eca-mir-501: chrX: 40074566-40074649 [+]
• eca-mir-500-2: chrX: 40075101-40075184 [+]
• eca-mir-660: chrX: 40076530-40076626 [+]
• eca-mir-502: chrX: 40077407-40077486 [+]

Database links

• EntrezGene:MIR532
• miRBase Tracker:MI0012979

Mature sequence eca-miR-532-5p

• Accession: MIMAT0013235
• Sequence: 19 - caugccuugaguguaggaccgu - 40
• Deep sequencing: 4955 reads, 1 experiments
• Evidence: not experimental

Mature sequence eca-miR-532-3p

• Accession: MIMAT0013236
• Sequence: 56 - ccucccacacccaaggcuugca - 77
• Deep sequencing: 67 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).