Stem-loop sequence eca-mir-501

Accession

MI0012970 (change log)

Description

Equus caballus miR-501 stem-loop

Gene family

MIPF0000139; mir-500

Literature search

1 open access papers mention eca-mir-501
(1 sentences)

Stem-loop

   -g   u      cuc      c    cu     agag   uuu 
5'   cuc cccucu   auccuu gucc  gggug    ugc   c
     ||| ||||||   |||||| ||||  |||||    |||   c
3'   gag gggaga   uaggaa cggg  uccac    acg   g
   cg   c      ccu      -    --     -gua   uaa 

Deep sequencing

625 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chrX: 40074566-40074649 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000011707 ; CLCN5-201; intron 1

Clustered miRNAs

< 10kb from eca-mir-501

• eca-mir-532: chrX: 40068460-40068549 [+]
• eca-mir-188: chrX: 40068847-40068914 [+]
• eca-mir-500-1: chrX: 40073284-40073367 [+]
• eca-mir-362: chrX: 40073827-40073892 [+]
• eca-mir-501: chrX: 40074566-40074649 [+]
• eca-mir-500-2: chrX: 40075101-40075184 [+]
• eca-mir-660: chrX: 40076530-40076626 [+]
• eca-mir-502: chrX: 40077407-40077486 [+]

Database links

• EntrezGene:MIR501
• miRBase Tracker:MI0012970

Mature sequence eca-miR-501-5p

• Accession: MIMAT0013224
• Sequence: 15 - auccuucgucccugggugaga - 35
• Deep sequencing: 29 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).