Stem-loop eca-mir-450b

Accession

MI0012966

Description

Equus caballus eca-mir-450b precursor miRNA

Gene family

MIPF0000128; mir-450

Literature search

1 open access papers mention eca-mir-450b
(2 sentences)

Sequence

3782 reads, 572 reads per million, 1 experiments

uacaaaauuauUUUUGCAAUAUGUUCCUGAAUAuguaauauaaguguaUUGGGAACAUUUUGCAUCCAUAguuuuguau
(((((((((((...(((((.((((((((((((((.........)))).)))))))))).)))))...))))))))))).

Structure

-           UUU     U          -    gua 
 uacaaaauuau   UGCAA AUGUUCCUGA AUAu   a
 |||||||||||   ||||| |||||||||| ||||   u
 auguuuugAUA   ACGUU UACAAGGGUU ugug   a
u           CCU     U          a    aau 

Annotation confidence Not enough data

Genome context

chrX: 106948655-106948733 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-450b

Mature eca-miR-450b-5p

• Accession: MIMAT0013220
• Description: Equus caballus eca-miR-450b-5p mature miRNA
• Sequence: 12 - UUUUGCAAUAUGUUCCUGAAUA - 33
• Evidence: not_experimental

Mature eca-miR-450b-3p

• Accession: MIMAT0013221
• Description: Equus caballus eca-miR-450b-3p mature miRNA
• Sequence: 49 - UUGGGAACAUUUUGCAUCCAUA - 70
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131