Stem-loop sequence eca-mir-362

Accession

MI0012957 (change log)

Description

Equus caballus miR-362 stem-loop

Gene family

MIPF0000209; mir-362

Literature search

1 open access papers mention eca-mir-362
(2 sentences)

Stem-loop

   ucuc           acc        ag   - au 
5'     gaauccuugga   uaggugug  ugc c  u
       |||||||||||   ||||||||  ||| |   
3'     cuuaggaacuu   auccacac  acg g  u
   -aaa           ---        -a   u ac 

Deep sequencing

179 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chrX: 40073827-40073892 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000011707 ; CLCN5-201; intron 1

Clustered miRNAs

< 10kb from eca-mir-362

• eca-mir-532: chrX: 40068460-40068549 [+]
• eca-mir-188: chrX: 40068847-40068914 [+]
• eca-mir-500-1: chrX: 40073284-40073367 [+]
• eca-mir-362: chrX: 40073827-40073892 [+]
• eca-mir-501: chrX: 40074566-40074649 [+]
• eca-mir-500-2: chrX: 40075101-40075184 [+]
• eca-mir-660: chrX: 40076530-40076626 [+]
• eca-mir-502: chrX: 40077407-40077486 [+]

Database links

• EntrezGene:MIR362
• miRBase Tracker:MI0012957

Mature sequence eca-miR-362-5p

• Accession: MIMAT0013210
• Sequence: 6 - aauccuuggaaccuaggugugagu - 29
• Deep sequencing: 141 reads, 1 experiments
• Evidence: not experimental

Mature sequence eca-miR-362-3p

• Accession: MIMAT0013211
• Sequence: 43 - aacacaccuauucaaggauuca - 64
• Deep sequencing: 38 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).