Stem-loop eca-mir-188

Accession

MI0012946

Description

Equus caballus eca-mir-188 precursor miRNA

Gene family

MIPF0000113; mir-188

Literature search

1 open access papers mention eca-mir-188
(2 sentences)

Sequence

30 reads, 5 reads per million, 1 experiments

ucucaCAUCCCUUGCAUGGUGGAGGGugagcuuucugaaaacccCUCCCACAUGCAGGGUUUGCAgga
(((..((..(((((((((..((((((....(.....).....))))))..)))))))))..))..)))

Structure

   ca  UC         GU      -ugag u 
ucu  CA  CCUUGCAUG  GGAGGG     c u
|||  ||  |||||||||  ||||||     | u
agg  GU  GGGACGUAC  CCUCcc     g c
   AC  UU         AC      caaaa u 

Annotation confidence Not enough data

Genome context

chrX: 40068847-40068914 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from eca-mir-188

Mature eca-miR-188-5p

• Accession: MIMAT0013198
• Description: Equus caballus eca-miR-188-5p mature miRNA
• Sequence: 6 - CAUCCCUUGCAUGGUGGAGGG - 26
• Evidence: not_experimental

Mature eca-miR-188-3p

• Accession: MIMAT0013199
• Description: Equus caballus eca-miR-188-3p mature miRNA
• Sequence: 45 - CUCCCACAUGCAGGGUUUGCA - 65
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131