Stem-loop sequence eca-mir-106a

Accession

MI0012942 (change log)

Description

Equus caballus miR-106a stem-loop

Gene family

MIPF0000001; mir-17

Literature search

1 open access papers mention eca-mir-106a
(1 sentences)

Stem-loop

     u   cc    -ca        a  g     g   c  u 
5' cc ugg  augu   aagugcuu ca ugcag uag uu c
   || |||  ||||   |||||||| || ||||| ||| || u
3' gg acc  uaca   uucacgaa gu acguc auc ag g
     u   au    uuc        c  a     -   u  a 

Deep sequencing

1450 reads, 100 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chrX: 106692701-106692781 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-106a

• eca-mir-106a: chrX: 106692701-106692781 [-]
• eca-mir-18b: chrX: 106692551-106692609 [-]
• eca-mir-20b: chrX: 106692311-106692379 [-]
• eca-mir-19b-2: chrX: 106692173-106692268 [-]
• eca-mir-92a-2: chrX: 106692042-106692116 [-]
• eca-mir-363: chrX: 106691883-106691957 [-]

Database links

• EntrezGene:MIR106A
• miRBase Tracker:MI0012942

Mature sequence eca-miR-106a

• Accession: MIMAT0013194
• Sequence: 13 - caaagugcuuacagugcagguag - 35
• Deep sequencing: 1440 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).