Stem-loop eca-mir-99a-2

Accession

MI0012929

Description

Equus caballus eca-mir-99a-2 precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

17624 reads, 2668 reads per million, 1 experiments

cccauuggcauaAACCCGUAGAUCCGAUCUUGUGgugaaguggaccucacaagcucgcuucuaugggucugugucagugug
..((((((((((.(((((((((..(((.(((((((.(........)))))))).)))..))))))))).))))))))))..

Structure

cc          A         UC   U       u aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUGg g   u
  |||||||||| |||||||||  ||| ||||||| |    
  gugacugugu uggguaucu  gcu gaacacu c   g
gu          c         uc   c       - cag 

Annotation confidence High

Genome context

chr26: 15508980-15509060 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-99a-2

Mature eca-miR-99a

• Accession: MIMAT0013184
• Description: Equus caballus eca-miR-99a mature miRNA
• Sequence: 13 - AACCCGUAGAUCCGAUCUUGUG - 34
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131