Stem-loop eca-mir-541

Accession

MI0012911

Description

Equus caballus eca-mir-541 precursor miRNA

Gene family

MIPF0000213; mir-541

Sequence

42 reads, 6 reads per million, 1 experiments

acgucagggaaaggauucugcugucggucccacuccagaguucgcaaaaugggUGGUGGGCACAGAAUCCAGUCUcugcuugug
(((.((((((..((((((((.((((.(..((((.(((............)))))))).))))))))))))..))))))..))).

Structure

-   -u      aa        c    g uc    u   gaguu 
 acg  caggga  ggauucug uguc g  ccac cca     c
 |||  ||||||  |||||||| |||| |  |||| |||      
 ugu  gucUCU  CCUAAGAC ACGG U  GGUg ggu     g
g   uc      GA        -    G --    -   aaaac 

Annotation confidence Not enough data

Genome context

chr24: 42934714-42934797 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from eca-mir-541

Mature eca-miR-541

• Accession: MIMAT0013168
• Description: Equus caballus eca-miR-541 mature miRNA
• Sequence: 54 - UGGUGGGCACAGAAUCCAGUCU - 75
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131