Stem-loop eca-mir-494

Accession

MI0012907

Description

Equus caballus eca-mir-494 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

1 open access papers mention eca-mir-494
(1 sentences)

Sequence

85 reads, 13 reads per million, 1 experiments

gauacucgaaggagagguuguccguguugucuucucuuuauuuaugaUGAAACAUACACGGGAAACCUCuuuuuuaguauc
((((((.((((((((((((.((((((((((.(((((.........)).)))))).))))))).))))))))))))))))))

Structure

      c            g       -   c   -  uuu 
gauacu gaaggagagguu uccgugu ugu uuc uc   a
|||||| |||||||||||| ||||||| ||| ||| ||   u
cuauga uuuuuuCUCCAA GGGCACA ACA AAG ag   u
      -            A       U   -   U  uau 

Annotation confidence Not enough data

Genome context

chr24: 42902171-42902251 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from eca-mir-494

Mature eca-miR-494

• Accession: MIMAT0013164
• Description: Equus caballus eca-miR-494 mature miRNA
• Sequence: 48 - UGAAACAUACACGGGAAACCUC - 69
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131