Stem-loop eca-mir-485

Accession

MI0012903

Description

Equus caballus eca-mir-485 precursor miRNA

Gene family

MIPF0000201; mir-485

Sequence

208 reads, 31 reads per million, 1 experiments

acuugaagAGAGGCUGGCCGUGAUGAAUUCgauucaucaaagcgaGUCAUACACGGCUCUCCUCUCUuuuagu
(((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).)))

Structure

   u         CU       -    A    auuc 
acu gaagAGAGG  GGCCGUG AUGA UUCg    a
||| |||||||||  ||||||| |||| ||||    u
uga uuUCUCUCC  UCGGCAC UACU Gagc    c
   u         UC       A    -    gaaa 

Annotation confidence High

Genome context

chr24: 42925986-42926058 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from eca-mir-485

Mature eca-miR-485-5p

• Accession: MIMAT0013159
• Description: Equus caballus eca-miR-485-5p mature miRNA
• Sequence: 9 - AGAGGCUGGCCGUGAUGAAUUC - 30
• Evidence: not_experimental

Mature eca-miR-485-3p

• Accession: MIMAT0013160
• Description: Equus caballus eca-miR-485-3p mature miRNA
• Sequence: 46 - GUCAUACACGGCUCUCCUCUCU - 67
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131