Stem-loop sequence eca-mir-433

Accession

MI0012902 (change log)

Description

Equus caballus miR-433 stem-loop

Gene family

MIPF0000177; mir-433

Literature search

2 open access papers mention eca-mir-433
(90 sentences)

Stem-loop

   ------------------------ugcccgg      gua   u           u   --------  g     cu 
5'                                ggagaa   cgg gagccugucau auu        ca agagg  a
                                  ||||||   ||| ||||||||||| |||        || |||||   
3'                                ccucuu   gcu cucggguagua uag        gu ucucc  g
   cccgacggaaguaccacaccacggcgaugga      gug   c           c   gaagaauu  g     ua 

Deep sequencing

100 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr24: 42745895-42746018 [+]
• Overlapping transcripts:

  antisense

  ENSECAT00000005871 ; eca-mir-433-201; exon 1

Clustered miRNAs

< 10kb from eca-mir-433

• eca-mir-337: chr24: 42738909-42739000 [+]
• eca-mir-431: chr24: 42745020-42745108 [+]
• eca-mir-433: chr24: 42745895-42746018 [+]
• eca-mir-127: chr24: 42747005-42747074 [+]
• eca-mir-432: chr24: 42748485-42748573 [+]
• eca-mir-136: chr24: 42748685-42748746 [+]

Database links

• EntrezGene:MIR433
• miRBase Tracker:MI0012902

Mature sequence eca-miR-433

• Accession: MIMAT0013158
• Sequence: 67 - aucaugaugggcuccucggugu - 88
• Deep sequencing: 88 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).