Stem-loop sequence eca-mir-431

AccessionMI0012900 (change log)
DescriptionEquus caballus miR-431 stem-loop
Gene family MIPF0000142; mir-431
Literature search

1 open access papers mention eca-mir-431
(1 sentences)

   ---    c       u          c  u a     ----   aca 
5'    cguc ugcgagg gucuugcagg cg c ugcag    gcc   c
      |||| ||||||| |||||||||| || | |||||    |||    
3'    gcag acgcucu cgggacguuc gc g acguu    ugg   u
   aca    a       u          u  u g     gcaa   cag 
Get sequence
Deep sequencing
201 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (EquCab2.0; GCF_000002305.2) Overlapping transcripts
chr24: 42745020-42745108 [+]
ENSECAT00000027327 ; eca-mir-431-201; exon 1
ENSECAT00000005871 ; eca-mir-433-201; exon 1
Clustered miRNAs
< 10kb from eca-mir-431
eca-mir-337chr24: 42738909-42739000 [+]
eca-mir-431chr24: 42745020-42745108 [+]
eca-mir-433chr24: 42745895-42746018 [+]
eca-mir-127chr24: 42747005-42747074 [+]
eca-mir-432chr24: 42748485-42748573 [+]
eca-mir-136chr24: 42748685-42748746 [+]
Database links

Mature sequence eca-miR-431

Accession MIMAT0013156

13 - 


 - 35

Get sequence
Deep sequencing44 reads, 1 experiments
Evidence not experimental


PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).