Stem-loop sequence eca-mir-431

Accession

MI0012900 (change log)

Description

Equus caballus miR-431 stem-loop

Gene family

MIPF0000142; mir-431

Literature search

1 open access papers mention eca-mir-431
(1 sentences)

Stem-loop

   ---    c       u          c  u a     ----   aca 
5'    cguc ugcgagg gucuugcagg cg c ugcag    gcc   c
      |||| ||||||| |||||||||| || | |||||    |||    
3'    gcag acgcucu cgggacguuc gc g acguu    ugg   u
   aca    a       u          u  u g     gcaa   cag 

Deep sequencing

201 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr24: 42745020-42745108 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000027327 ; eca-mir-431-201; exon 1

  antisense

  ENSECAT00000005871 ; eca-mir-433-201; exon 1

Clustered miRNAs

< 10kb from eca-mir-431

• eca-mir-337: chr24: 42738909-42739000 [+]
• eca-mir-431: chr24: 42745020-42745108 [+]
• eca-mir-433: chr24: 42745895-42746018 [+]
• eca-mir-127: chr24: 42747005-42747074 [+]
• eca-mir-432: chr24: 42748485-42748573 [+]
• eca-mir-136: chr24: 42748685-42748746 [+]

Database links

• EntrezGene:MIR431
• miRBase Tracker:MI0012900

Mature sequence eca-miR-431

• Accession: MIMAT0013156
• Sequence: 13 - ugucuugcaggccgucaugcagg - 35
• Deep sequencing: 44 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).