Stem-loop eca-mir-410

Accession

MI0012897

Description

Equus caballus eca-mir-410 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

1 open access papers mention eca-mir-410
(2 sentences)

Sequence

2812 reads, 426 reads per million, 1 experiments

ugaggagagguugucugugaugaguucgcuuuauuaaugacgAAUAUAACACAGAUGGCCUGUcuucaguacca
((((((.((((((((((((.((.((((((.........).))))).)).)))))))))))).))))))......

Structure

------      g            a  a     - uuu 
      ugagga agguugucugug ug guucg c   a
      |||||| |||||||||||| || ||||| |   u
      acuucU UCCGGUAGACAC AU UAAgc g   u
accaug      G            A  A     a uaa 

Annotation confidence Not enough data

Genome context

chr24: 42936264-42936337 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from eca-mir-410

Mature eca-miR-410

• Accession: MIMAT0013153
• Description: Equus caballus eca-miR-410 mature miRNA
• Sequence: 43 - AAUAUAACACAGAUGGCCUGU - 63
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131