Stem-loop sequence eca-mir-410

Accession

MI0012897 (change log)

Description

Equus caballus miR-410 stem-loop

Gene family

MIPF0000018; mir-154

Literature search

1 open access papers mention eca-mir-410
(2 sentences)

Stem-loop

   ------      g    ug      a  a     - uuu 
5'       ugagga aggu  ucugug ug guucg c   a
         |||||| ||||  |||||| || ||||| |   u
3'       acuucu uccg  agacac au uaagc g   u
   accaug      g    gu      a  a     a uaa 

Deep sequencing

3183 reads, 200 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr24: 42936264-42936337 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-410

• eca-mir-154a: chr24: 42930163-42930226 [+]
• eca-mir-154b: chr24: 42930413-42930553 [+]
• eca-mir-496: chr24: 42930990-42931092 [+]
• eca-mir-377: chr24: 42932739-42932807 [+]
• eca-mir-541: chr24: 42934714-42934797 [+]
• eca-mir-409: chr24: 42935634-42935712 [+]
• eca-mir-412: chr24: 42935784-42935863 [+]
• eca-mir-369: chr24: 42935933-42936002 [+]
• eca-mir-410: chr24: 42936264-42936337 [+]
• eca-mir-656: chr24: 42937011-42937088 [+]

Database links

• EntrezGene:MIR410
• miRBase Tracker:MI0012897

Mature sequence eca-miR-410

• Accession: MIMAT0013153
• Sequence: 43 - aauauaacacagauggccugu - 63
• Deep sequencing: 3182 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).