Stem-loop sequence eca-mir-369

AccessionMI0012886 (change log)
DescriptionEquus caballus miR-369 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
   u   ag               ca      cuuua 
5'  uga  ggagaucgaccgugu  uauucg     u
    |||  |||||||||||||||  ||||||      
3'  gcu  uuucuaguugguaca  auaagc     u
   g   cu               ua      uucag
Get sequence
Deep sequencing
543 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (EquCab2.0; GCF_000002305.2) Overlapping transcripts
chr24: 42935933-42936002 [+]
intergenic
Clustered miRNAs
< 10kb from eca-mir-369
eca-mir-485chr24: 42925986-42926058 [+]
eca-mir-154achr24: 42930163-42930226 [+]
eca-mir-154bchr24: 42930413-42930553 [+]
eca-mir-496chr24: 42930990-42931092 [+]
eca-mir-377chr24: 42932739-42932807 [+]
eca-mir-541chr24: 42934714-42934797 [+]
eca-mir-409chr24: 42935634-42935712 [+]
eca-mir-412chr24: 42935784-42935863 [+]
eca-mir-369chr24: 42935933-42936002 [+]
eca-mir-410chr24: 42936264-42936337 [+]
eca-mir-656chr24: 42937011-42937088 [+]
Database links

Mature sequence eca-miR-369-5p

Accession MIMAT0013140
Sequence

9 -  

agaucgaccgugucauauucgc

 - 30

Get sequence
Deep sequencing116 reads, 1 experiments
Evidence not experimental

Mature sequence eca-miR-369-3p

Accession MIMAT0013141
Sequence

44 -  

aauaauacaugguugaucuuu

 - 64

Get sequence
Deep sequencing427 reads, 1 experiments
Evidence not experimental

References

1
PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).