Stem-loop eca-mir-323

Accession

MI0012881

Description

Equus caballus eca-mir-323 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

1 open access papers mention eca-mir-323
(2 sentences)

Sequence

108 reads, 16 reads per million, 1 experiments

uugguacuuggagagAGGUGGUCCGUGGCGCGUUCGCuuuauuuauggcgCACAUUACACGGUCGACCUCUuugcaguaucuaauc
..((((((.(.((((((((.(.(((((..(.((.((((........)))).)).)..))))).).)))))))).))))))).....

Structure

---uu      u g        G U     GC C  U    uua 
     gguacu g agagAGGU G CCGUG  G GU CGCu   u
     |||||| | |||||||| | |||||  | || ||||    
     cuauga c uuUCUCCA C GGCAC  U CA gcgg   u
cuaau      - g        G U     AU A  C    uau 

Annotation confidence Not enough data

Genome context

chr24: 42898304-42898389 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from eca-mir-323

Mature eca-miR-323-5p

• Accession: MIMAT0013131
• Description: Equus caballus eca-miR-323-5p mature miRNA
• Sequence: 16 - AGGUGGUCCGUGGCGCGUUCGC - 37
• Evidence: not_experimental

Mature eca-miR-323-3p

• Accession: MIMAT0013132
• Description: Equus caballus eca-miR-323-3p mature miRNA
• Sequence: 51 - CACAUUACACGGUCGACCUCU - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131