Stem-loop sequence eca-mir-204b-2

Accession

MI0012862 (change log)

Description

Equus caballus miR-204b-2 stem-loop

Gene family

MIPF0000042; mir-204

Literature search

2 open access papers mention eca-mir-204b-2
(10 sentences)

Stem-loop

   u    u          a     u    gagaau 
5'  ggac ucccuuuguc uccua gccu      a
    |||| |||||||||| ||||| ||||      u
3'  cuug agggaaacgg agggu cgga      a
   a    c          a     -    ggaagu 

Deep sequencing

7090 reads, 400 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr23: 20137064-20137131 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000028567 ; eca-mir-204b-2-201; exon 1

  ENSECAT00000009675 ; TRPM3-202; intron 6

  ENSECAT00000009560 ; TRPM3-201; intron 7

Database links

• EntrezGene:MIR204B-2
• miRBase Tracker:MI0012862

Mature sequence eca-miR-204b

• Accession: MIMAT0013112
• Sequence: 6 - uucccuuugucauccuaugccu - 27
• Deep sequencing: 7088 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).