Stem-loop eca-mir-499

Accession

MI0012858

Description

Equus caballus eca-mir-499 precursor miRNA

Gene family

MIPF0000173; mir-499

Literature search

2 open access papers mention eca-mir-499
(2 sentences)

Sequence

23 reads, 3 reads per million, 1 experiments

uguucuguccccugcacccugggcgggcggcugUUAAGACUUGCAGUGAUGUUUaacuccucuccacgugAACAUCACAGCAAGUCUGUGCUgcuucccguccccaugcugccugggcagggu
..((((((((.(.(((....(((((((.(((.((..((((((((.((((((((((.............)))))))))).))))))))..)).))).)))))))...))).)...)))))))).

Structure

ug        --c u   cccu       c   u  UA        A          acucc 
  uucugucc   c gca    gggcggg ggc gU  AGACUUGC GUGAUGUUUa     u
  ||||||||   | |||    ||||||| ||| ||  |||||||| ||||||||||     c
  gggacggg   g cgu    ccugccc ucg CG  UCUGAACG CACUACAAgu     u
-u        ucc u   -acc       u   U  UG        A          gcacc 

Annotation confidence Not enough data

Genome context

chr22: 25813224-25813346 [+]

Mature eca-miR-499-5p

• Accession: MIMAT0013108
• Description: Equus caballus eca-miR-499-5p mature miRNA
• Sequence: 34 - UUAAGACUUGCAGUGAUGUUU - 54
• Evidence: not_experimental

Mature eca-miR-499-3p

• Accession: MIMAT0013109
• Description: Equus caballus eca-miR-499-3p mature miRNA
• Sequence: 71 - AACAUCACAGCAAGUCUGUGCU - 92
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131