Stem-loop eca-mir-133b

Accession

MI0012844

Description

Equus caballus eca-mir-133b precursor miRNA

Gene family

MIPF0000029; mir-133

Literature search

5 open access papers mention eca-mir-133b
(12 sentences)

Sequence

21 reads, 3 reads per million, 1 experiments

uggcuggucaaacggaaccaaguccgucuuccugagaggUUUGGUCCCCUUCAACCAGCUA
((((((((..((.((.((((((.((.((((...)))))))))))).)).))..))))))))

Structure

        ca  c  a      u  g    c 
uggcuggu  aa gg accaag cc ucuu  
||||||||  || || |||||| || |||| c
AUCGACCA  UU CC UGGUUU gg agag  
        AC  C  C      -  -    u 

Annotation confidence Not enough data

Genome context

chr20: 49824706-49824766 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-133b

Mature eca-miR-133b

• Accession: MIMAT0013097
• Description: Equus caballus eca-miR-133b mature miRNA
• Sequence: 40 - UUUGGUCCCCUUCAACCAGCUA - 61
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131