Stem-loop sequence eca-mir-133b

Accession

MI0012844 (change log)

Description

Equus caballus miR-133b stem-loop

Gene family

MIPF0000029; mir-133

Literature search

5 open access papers mention eca-mir-133b
(12 sentences)

Stem-loop

           ca  c  a      u  g      
5' uggcuggu  aa gg accaag cc ucuuc 
   ||||||||  || || |||||| || |||| c
3' aucgacca  uu cc ugguuu gg agagu 
           ac  c  c      -  -      

Deep sequencing

126 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr20: 49824706-49824766 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-133b

• eca-mir-206-2: chr20: 49820595-49820663 [+]
• eca-mir-133b: chr20: 49824706-49824766 [+]

Database links

• EntrezGene:MIR133B
• miRBase Tracker:MI0012844

Mature sequence eca-miR-133b

• Accession: MIMAT0013097
• Sequence: 40 - uuugguccccuucaaccagcua - 61
• Deep sequencing: 126 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).