Stem-loop sequence eca-mir-128-1

Accession

MI0012821 (change log)

Previous IDs

eca-mir-128

Description

Equus caballus miR-128 stem-loop

Gene family

MIPF0000048; mir-128

Literature search

2 open access papers mention eca-mir-128-1
(21 sentences)

Stem-loop

   u ug       a          aug      ac    g gag 
5'  g  caguggg aggggggccg   cacugu  gaga u   u
    |  ||||||| ||||||||||   ||||||  |||| |    
3'  u  gucaucc uuucucuggc   gugaca  cucu g   a
   c gu       c          caa      --    g acg 

Deep sequencing

1815 reads, 50 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr16: 49087163-49087246 [-]
• Overlapping transcripts:

  sense

  ENSECAT00000024789 ; ARPP21-202; intron 16

  ENSECAT00000024792 ; ARPP21-203; intron 16

  ENSECAT00000024679 ; ARPP21-201; intron 18

Database links

• EntrezGene:MIR128
• miRBase Tracker:MI0012821

Mature sequence eca-miR-128

• Accession: MIMAT0013076
• Sequence: 52 - ucacagugaaccggucucuuu - 72
• Deep sequencing: 3715 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).