Stem-loop eca-mir-143

Accession

MI0012807

Description

Equus caballus eca-mir-143 precursor miRNA

Gene family

MIPF0000094; mir-143

Literature search

1 open access papers mention eca-mir-143
(9 sentences)

Sequence

854911 reads, 129412 reads per million, 1 experiments

gcccgaggugcagugcugcaucucuggucaguugggagucUGAGAUGAAGCACUGUAGCUCagg
.((.(((.(((((((((.((((((.((((......)).)).)))))).))))))))).))).))

Structure

g  c   g         g      u  -  ag 
 cc gag ugcagugcu caucuc gg uc  u
 || ||| ||||||||| |||||| || ||   
 gg CUC AUGUCACGA GUAGAG cu ag  u
-  a   G         A      U  g  gg 

Annotation confidence High

Genome context

chr14: 28434698-28434761 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-143

Mature eca-miR-143

• Accession: MIMAT0013063
• Description: Equus caballus eca-miR-143 mature miRNA
• Sequence: 41 - UGAGAUGAAGCACUGUAGCUC - 61
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131