Stem-loop sequence eca-mir-143

Accession

MI0012807 (change log)

Description

Equus caballus miR-143 stem-loop

Gene family

MIPF0000094; mir-143

Literature search

1 open access papers mention eca-mir-143
(9 sentences)

Stem-loop

   g  c   g         g      u  -  ag 
5'  cc gag ugcagugcu caucuc gg uc  u
    || ||| ||||||||| |||||| || ||   
3'  gg cuc augucacga guagag cu ag  u
   -  a   g         a      u  g  gg 

Deep sequencing

1199766 reads, 8.92e+04 reads per million, 2 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr14: 28434698-28434761 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-143

• eca-mir-143: chr14: 28434698-28434761 [-]
• eca-mir-145: chr14: 28433270-28433339 [-]

Database links

• EntrezGene:MIR143
• miRBase Tracker:MI0012807

Mature sequence eca-miR-143

• Accession: MIMAT0013063
• Sequence: 41 - ugagaugaagcacuguagcuc - 61
• Deep sequencing: 1199461 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).