Stem-loop eca-mir-107a

Accession

MI0012805

Description

Equus caballus eca-mir-107a precursor miRNA

Gene family

MIPF0000024; mir-103

Literature search

2 open access papers mention eca-mir-107a
(6 sentences)

Sequence

4508 reads, 682 reads per million, 1 experiments

cucacugcccucggcuucuuuacagugcugccuuguugcggauggaucaAGCAGCAUUGUACAGGGCUAUGA
.(((..(((((.(.......(((((((((((.(((.(.(....).).))))))))))))))))))))..)))

Structure

c   cu     c gcuucuu           c   u g g 
 uca  gcccu g       uacagugcugc uug u c g
 |||  ||||| |       ||||||||||| ||| | |  
 AGU  CGGGA C       AUGUUACGACG Aac a g a
-   AU     - -------           -   u g u 

Annotation confidence Not enough data

Genome context

chr14: 12370468-12370539 [+]

Mature eca-miR-107a

• Accession: MIMAT0013061
• Description: Equus caballus eca-miR-107a mature miRNA
• Sequence: 50 - AGCAGCAUUGUACAGGGCUAUGA - 72
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131