Stem-loop sequence eca-mir-25

Accession

MI0012801 (change log)

Description

Equus caballus miR-25 stem-loop

Gene family

MIPF0000013; mir-25

Literature search

1 open access papers mention eca-mir-25
(1 sentences)

Stem-loop

       a ug   ag    g     uu g     u   --  ac 
5' ggcc g  uug  aggc gagac  g gcaau gcu  gg  g
   |||| |  |||  |||| |||||  | ||||| |||  ||  c
3' ccgg c  gac  ucug cucug  c cguua cgg  cc  u
       c gu   ag    g     uu a     -   gu  cg 

Deep sequencing

9385 reads, 600 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr13: 8034246-8034329 [-]
• Overlapping transcripts:

  sense

  ENSECAT00000015853 ; MCM7-201; intron 13

Clustered miRNAs

< 10kb from eca-mir-25

• eca-mir-106b: chr13: 8034691-8034749 [-]
• eca-mir-93: chr13: 8034465-8034523 [-]
• eca-mir-25: chr13: 8034246-8034329 [-]

Database links

• EntrezGene:MIR25
• miRBase Tracker:MI0012801

Mature sequence eca-miR-25

• Accession: MIMAT0013057
• Sequence: 52 - cauugcacuugucucggucuga - 73
• Deep sequencing: 9363 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).