Stem-loop eca-mir-193a

Accession

MI0012773

Description

Equus caballus eca-mir-193a precursor miRNA

Gene family

MIPF0000082; mir-193

Literature search

2 open access papers mention eca-mir-193a
(4 sentences)

Sequence

33 reads, 5 reads per million, 1 experiments

gggagcugagggcUGGGUCUUUGCGGGCGAGAUGAgggugucaguucAACUGGCCUACAAAGUCCCAGUcuucggcccccg
(((.(((((((((((((.(((((.((((.((.((((........)))).)).)))).))))).))))))))))))).))).

Structure

-   a             U     C    G  A    ggu 
 ggg gcugagggcUGGG CUUUG GGGC AG UGAg   g
 ||| ||||||||||||| ||||| |||| || ||||    
 ccc cggcuucUGACCC GAAAC UCCG UC Acuu   u
g   c             U     A    G  A    gac 

Annotation confidence Not enough data

Genome context

chr11: 40807843-40807923 [-]

Mature eca-miR-193a-5p

• Accession: MIMAT0013025
• Description: Equus caballus eca-miR-193a-5p mature miRNA
• Sequence: 14 - UGGGUCUUUGCGGGCGAGAUGA - 35
• Evidence: not_experimental

Mature eca-miR-193a-3p

• Accession: MIMAT0013026
• Description: Equus caballus eca-miR-193a-3p mature miRNA
• Sequence: 48 - AACUGGCCUACAAAGUCCCAGU - 69
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131