Stem-loop eca-mir-30b

Accession

MI0012757

Description

Equus caballus eca-mir-30b precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

3 open access papers mention eca-mir-30b
(9 sentences)

Sequence

1908 reads, 289 reads per million, 1 experiments

UGUAAACAUCCUACACUCAGCUguacuacauggauuggcugggagguggauguuuacu
.((((((((((.((.((((((((..(.....)...))))))))..)))))))))))).

Structure

U          U  -A        -ua u 
 GUAAACAUCC AC  CUCAGCUg   c a
 |||||||||| ||  ||||||||   | c
 cauuuguagg ug  gggucggu   g a
u          -  ga        uag u 

Annotation confidence Not enough data

Genome context

chr9: 75208370-75208427 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-30b

Mature eca-miR-30b

• Accession: MIMAT0013005
• Description: Equus caballus eca-miR-30b mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCAGCU - 22
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131