Stem-loop eca-mir-301b

Accession

MI0012752

Description

Equus caballus eca-mir-301b precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

13 reads, 2 reads per million, 1 experiments

ccuccugcuggccgcagguGCUGUGACGAUGUUGCACUACUgugcucugagaagCAGUGCAAUGAUAUUGUCAAAGCaucugggacuagccuugggg
.((((.(((((((.((((((((.(((((((((((((((.((...........)).))))))...))))))))).)))))))))).)))))...))))

Structure

c    --u     -  g        G         ---      A  gugc 
 cucc   gcugg cc cagguGCU UGACGAUGU   UGCACU CU    u
 ||||   ||||| || |||||||| |||||||||   |||||| ||    c
 gggg   cgauc gg gucuaCGA ACUGUUAUA   ACGUGA ga    u
-    uuc     a  -        A         GUA      C  agag 

Annotation confidence Not enough data

Genome context

chr8: 3382779-3382875 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-301b

Mature eca-miR-301b-5p

• Accession: MIMAT0013000
• Description: Equus caballus eca-miR-301b-5p mature miRNA
• Sequence: 20 - GCUGUGACGAUGUUGCACUACU - 41
• Evidence: not_experimental

Mature eca-miR-301b-3p

• Accession: MIMAT0013001
• Description: Equus caballus eca-miR-301b-3p mature miRNA
• Sequence: 55 - CAGUGCAAUGAUAUUGUCAAAGC - 77
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131